Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12627039 chr21:34600508 G/T 0.00011 172 21.9 31.2 25.08 KM Plot
PCPG rs12628875 chr22:21285285 A/G 7.74E-5 177 12.57 31.68 25.2 KM Plot
PCPG rs12629138 chr3:53373238 G/T 0.000189 178 25.17 39.3 26.73 KM Plot
PCPG rs12630102 chr3:80548280 G/C 6.66E-5 177 19.87 23.53 27.2 KM Plot
PCPG rs12631508 chr3:108534916 G/A 6.34E-5 174 25.47 20.3 22.7 KM Plot
PCPG rs12632575 chr3:53087088 G/A 6.22E-6 175 11.78 19.3 25.87 KM Plot
PCPG rs12633047 chr3:53393844 C/T 0.000187 178 25.28 31.9 26.73 KM Plot
PCPG rs12633922 chr3:125560478 G/A 0.000379 174 25.53 30.67 6.1 KM Plot
PCPG rs12635325 chr3:80548069 C/T 6.02E-5 178 27.2 24.53 19.53 KM Plot
PCPG rs12637881 chr3:39172642 G/A 6.11E-6 177 25.87 21.95 19.87 KM Plot
PCPG rs12638230 chr3:80581714 A/T 5.71E-5 172 25.17 23.53 27.4 KM Plot
PCPG rs12655422 chr5:179480825 C/A 1.35E-5 176 24.23 32.15 25.17 KM Plot
PCPG rs12657458 chr5:13806595 C/A 0.000129 177 28.47 18.45 24.33 KM Plot
PCPG rs12668022 chr7:66328919 A/T 0.000217 178 24.7 29.57 33.17 KM Plot
PCPG rs12669515 chr7:158883817 C/T 0 178 25.28 41.8 3.17 KM Plot